PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0311s0230.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 309aa    MW: 35249.7 Da    PI: 6.4063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0311s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.72.9e-50151391128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lp+GfrFhPtd+elv++yL kk+ g+++++  +i+e+d+yk++Pw+Lp+++  +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg
  SapurV1A.0311s0230.1.p  15 LPAGFRFHPTDDELVNHYLIKKCGGQSISV-PIIAEIDLYKYDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATG 100
                             799***************************.88***************7666789******************************** PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              dk++ +   +  g+kk Lvfy g+ap+g kt+W+mheyrl
  SapurV1A.0311s0230.1.p 101 ADKPIGR--PKPLGIKKALVFYAGKAPRGIKTNWIMHEYRL 139
                             *****98..789***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-616165IPR003441NAC domain
PROSITE profilePS5100558.82815165IPR003441NAC domain
PfamPF023655.6E-2616139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKGNGSAAAA DQLELPAGFR FHPTDDELVN HYLIKKCGGQ SISVPIIAEI DLYKYDPWQL  60
PEMALYGEKE WYFFSPRDRK YPNGSRPNRA AGTGYWKATG ADKPIGRPKP LGIKKALVFY  120
AGKAPRGIKT NWIMHEYRLA NVDRSAGKKN NLRLDDWVLC RIYNKKGSIE KHFPAERKSI  180
TKYSEMEEQK PNIDEMSVYQ NGRSTMGAPA TMMSHSNDLL NMDTSESAPR LHTDSSCSEH  240
VLSPEFTCEK EVQSQQKLWN DELDNALDFN FNYIDDGFQD DPFASQVQFQ MDQLSPLQDM  300
FMYSQRPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-8291719174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2237840.0CU223784.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306280.10.0hypothetical protein POPTR_0005s07060g
SwissprotQ390131e-128NAC2_ARATH; NAC domain-containing protein 2
TrEMBLB9H4N30.0B9H4N3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s07060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-129NAC family protein